Browse of TCMCG005C20219 protein

CDS

Accession Number	TCMCG005C20219
gbkey	CDS
Protein Id	XP_020270527.1
Location	join(5918644..5918656,5918735..5918778,5918867..5918933,5919041..5919207)
Gene	LOC109845669
GeneID	109845669
Organism	Asparagus officinalis

Protein

Length	96aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA376608;
db_source	XM_020414938.1
Definition	DNA repair helicase XPB1-like

EGGNOG-MAPPER Annotation

COG_category	KL
Description	a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies
KEGG_TC	-
KEGG_Module	M00290        [VIEW IN KEGG]
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko00002        [VIEW IN KEGG] ko01000        [VIEW IN KEGG] ko03021        [VIEW IN KEGG] ko03400        [VIEW IN KEGG]
KEGG_ko	ko:K10843        [VIEW IN KEGG]
EC	3.6.4.12        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway	ko03022        [VIEW IN KEGG] ko03420        [VIEW IN KEGG] map03022        [VIEW IN KEGG] map03420        [VIEW IN KEGG]
GOs	GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005737        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0009314        [VIEW IN EMBL-EBI] GO:0009411        [VIEW IN EMBL-EBI] GO:0009416        [VIEW IN EMBL-EBI] GO:0009628        [VIEW IN EMBL-EBI] GO:0010224        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0050896        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGCAGACCGTGGTGAAAGAGGTCGGCCGTCCAAAAAGCACAAGTCCTCGTCAAAAGCCGCTCAGGTTGTGGAAGAAGAAGAGCTCTATTTCGGAGAAGATTCGGATGATGATAGGCGACGAGGAGAGACGAAGAAGAATGACTTCACGAAGCTTGAGTTGAAGCCTGATCACGTAAACAGGCCCCTTTGGGCGTGCGGCGACGGCAGGATATTTCTTGAGACGTTTTCTCCTTTGTATAAACAGGCTTATGACTTCCTCATTGCCATTGCTGAGCCAGTGTGCAGGTGA

Protein:   MADRGERGRPSKKHKSSSKAAQVVEEEELYFGEDSDDDRRRGETKKNDFTKLELKPDHVNRPLWACGDGRIFLETFSPLYKQAYDFLIAIAEPVCR